I've read a popular scientific stuff about DNA, RNA, proteins, cells, prokaryotes and eukaryotes their structures, roles, operational principles, evolution.

All the computer technologies and robotics seem like a childish babbling comparing to microbiology and molecular biology.

I would wish to be so open minded, and have so capable brain with infinite work capacity (and live so long life ) to push, to break through the borders of knowledge of the humanity.

Ah, I envy to the Renaissance people who were capble to hold and drive the science and art, this contrasts so much with contemporary specializations.

Well, it's jxom no more but also csharpxom!

A project concerns demanded us to create a C# 3.0 xml schema.

Shortly we expect to create an xslt serializing an xml document in this schema into a text. Thankfully to the original design we can reuse java streamer almost without changes.

A fact: C# schema more than twice bigger than the java's.

Today, I've found a C++0x FAQ by Bjarne Stroustrup reviewing most of the new features that we shall see in the next version.

A good insight for those who don't track the WG progress.

But what attracts me is a passage:

Sounds rather pessimistic to my taste.

There is a nice ServiceLoader API in java 6 implementing a service provider idiom. It's good (good because it's standard) class resolving interface implementation using META-INF/service location.

Unfortunately, there is even no JSR implementation for this class in java 5. This makes it impossible for us to use it.

What a nuisance!

Yesterday, we've found an article "Repackaging Saxon". It's about a decision to go away from Saxon-B/Saxon-SA packaging to a more conventional product line: Home/Professional/Enterprise Editions.

The good news are that the Saxon stays open source. That's most important as an open comunity spirit will be preserved. On the other hand Professional and Enterprise Editions will not be free.

In this regard the most interesting comments are:

John Cowan> I suspect that providing packaging only for $$ (or pounds or euros) won't actually work, because someone else will step in and provide that packaging for free, as the licensing permits.

and response:

Michael Kay> This will be interesting to see. I'm relying partly on the idea that there's a fair degree of trust, and expectation of support, associated with Saxonica's reputation, and that the people who are risking their business on the product might be hesitant to rely on third parties, who won't necessarily be prompt in issuing maintenance releases etc; at the same time, such third parties may serve the needs of the hobbyists who are the real market for the open source version.

and also:

Michael Kay> ...I haven't been able to make a model based on paid services plus free software work for me. It's hard enough to get the services business; when you do get it, it's hard to get enough revenue from it to fund the time spent on developing and supporting the software. Personally, I think the culture of free software has gone too far, and it is now leading to a lack of investment in new software...

Today we have seen an article: "The Death of XSLT in Web Frameworks". Who wants, please read.

Both Arthur's and mine reactions were equal...

Fabula of the article: I never read Pasternak but I disapprove him.

Background idea: What's not being hyped is dead.

See also: Web Application Frameworks.

Sunny> Look what have I found! Consider a C#:

public class T
{
  public T free;
}

public void NewTest()
{
  T cache = new T();

  Stopwatch timer = new Stopwatch();

  timer.Reset();
  timer.Start();

  for(int i = 0; i < 10000000; ++i)
  {
    // Get from cache.
    T t;

    if (cache.free == null)
    {
      cache.free = new T();
    }

    t = cache.free;

    // Release
    cache.free = t;
    t = null;
  }

  timer.Stop();

  long cacheTicks = timer.ElapsedTicks;

  timer.Reset();
  timer.Start();

  for(int i = 0; i < 10000000; ++i)
  {
    new T();
  }

  timer.Stop();

  long newTicks = timer.ElapsedTicks;

  Console.WriteLine("cache: {0}, new: {1}", cacheTicks, newTicks);
}

Gloomy> And?

Sunny> Tests show that new T() is almost as fast as caching! GC's "new" probably has a fast route, where it shifts free memory border in an atomic way, thus allocation takes just several cycles.

Gloomy> Well, you're probably right, there is a fast route. I, however, have a different opinion. To track references, a generational garbage collector implements field assign as a call rather than a mov. This routine, except move itself, marks touched memory page in a special card table (who said GC is cheap?); thus, I think, a reference field setter is almost as slow as the "new" call.

.Net is known for its array covariance. That means that any array can be cast to an array of base elements:

public class T: B
{
}

T[] tlist = ...
B[] blist = tlist;

This feature comes at cost:

B b = ...
T t = ...

blist[0] = b; // This efficiently is: blist[0] = (T)b;
tlist[0] = t; // This is the same: tlist[0] = (T)t;

We pay the cost of additional cast, just for nothing. Let this dubious design decision opresses .Net/Java inventors.

You can eliminate the cast. Just use array of structs:

struct S<T>
{
  public T t;
}

S<T>[] slist = ...

slist[0].t = t; // Works without cast.

Measurment show that S[] is ~35% faster than T[] on write, and slower (JIT could do better) on read.

Well, ugly workaround of ugly design.

P.S. In java there is no relief...

This happens in .NET Framework 3.5, 32 bit, VS 2008.

C#:

namespace NesterovskyBros.Test
{

  using Microsoft.VisualStudio.TestTools.UnitTesting;

  [TestClass]
  public class CharAtUnitTest
  {
    private TestContext testContextInstance;

    public TestContext TestContext
    {
      get { return testContextInstance; }
      set { testContextInstance = value; }
    }

    [TestMethod]
    public void CharAtTest()
    {
      this.text = "1";

      string token = Read(1, false);

      TestContext.WriteLine("token: {0}", token);
    }

    private string Read(int offset, bool flag)
    {
      string token = null;
      int c = 0;

      if (flag)
      {
        goto Whitespace;
      }

    Scan:
      c = CharAt(offset);

      switch(c)
      {
        case -1:
        {
          return "<Eof>";
        }
        case '\'':
        {
          token = "Literal";

          goto Literal;
        }
      }

    Whitespace:
      if (c == ' ')
      {
        return "Space";
      }

      return "Unknown";

    Literal:
      while(true)
      {
        int d = CharAt(offset);

        if (token != "Literal")
        {
          goto Scan;
        }

        if (d == c)
        {
          return token;
        }
      }
    }

    string text;

    private int CharAt(int offset)
    {
      string text = this.text;

      return (uint)offset >= (uint)text.Length ? -1 : text[offset];
    }
  }
}

In debug mode this test prints: "token: <Eof>". In release - "token: Unknown". The bug is so fragile that even slightest change in code removes it. Looking into disassembly we can see that the problem is near the switch:

    Scan:
      c = CharAt(offset); /* Our old friend, CharAt(). Inlined! */
00000017 mov edx,dword ptr [edi+8]
0000001a cmp dword ptr [edx+8],esi
0000001d jbe 00000032
0000001f cmp esi,dword ptr [edx+8]
00000022 jae 000000CE
00000028 movzx eax,word ptr [edx+esi*2+0Ch]
0000002d mov dword ptr [ebp-10h],eax
00000030 jmp 00000039
00000032 mov dword ptr [ebp-10h],0FFFFFFFFh /* Move -1 (four bytes) into stack. */
00000039 movzx edx,word ptr [ebp-10h] /* Get two bytes into edx (0FFFFh) */

      switch(c)
0000003d cmp edx,0FFFFFFFFh /* Never true. */
00000040 je 0000004A
00000042 cmp dword ptr [ebp-10h],27h
00000046 je 0000005A
00000048 jmp 00000062
      {
        case -1:
        {
          return "<Eof>";
0000004a mov eax,dword ptr ds:[022EDE68h]
00000050 lea esp,[ebp-0Ch]
00000053 pop ebx
00000054 pop esi
00000055 pop edi
00000056 pop ebp
00000057 ret 4

This looks like a tremendous bug, like one of those shaking belief in computer's infallibility.

It would be nice if you would verify the case on your computer.

Praises: I dare not to think how could we live without AnkhSVN.

At present we have:

• a generic parser;
• fully functional xquery parser;
• detailed error report, and syntax suggestion;
• high performance.

The idea of runtime grammar tree and a reader like parser results in a high performace, as we able to build a lookup tables to probe tokens. This allows us to start parsing immediately from the most specific grammar chain. For example, consider the xquery grammar:

[1] Module ::= VersionDecl? (LibraryModule | MainModule)

[2] VersionDecl ::= "xquery" "version" StringLiteral ("encoding" StringLiteral)? Separator

[3] MainModule ::= Prolog QueryBody

[4] LibraryModule ::= ModuleDecl Prolog

[5] ModuleDecl ::= "module" "namespace" NCName "=" URILiteral Separator

[6] Prolog ::=
  ((DefaultNamespaceDecl | Setter | NamespaceDecl | Import) Separator)*
  ((VarDecl | FunctionDecl | OptionDecl) Separator)*
...
[87] VarRef ::= "$" VarName

Formally, to parse xquery "$v" one needs to go deep into a grammar hierarchy. That's what is usually done. On the contrast, a lookup table for the grammar "Module", containing 80 different token runs, allows us to identify grammar chain just with a couple of probes:

This way, algorithmically, we outperform most of conventional parsers.

On the other hand, a parsed tree we're building, has a compact representation. Each tree node is defined with two text bookmarks, grammar chain, and a grammar specific data. What's important is that the production of garbage memory is very low, as the rate of parser's fail assumptions is small.

What should be done:

• Attach events to the xquery grammar to collect program constructions: variables, functions, namespaces in scope. This will provide auto completion info.

• Release inactive parsed subtrees. E.g. we can free tree of function body, and preserve its text range (two bookmarks).

Well, I'd like to think someone could understand anything in all this mumbling. All sources are at "Incremental parser" home.

There is a method Right() in the RB tree implementation:

public int Right(int node)
{
  return items[node].right;
}

JIT does not want to inline it, probably as the method may throw:

public int Right(int node)
{
  return items[node].right;
00000000 mov eax,dword ptr [ecx+4]
00000003 cmp edx,dword ptr [eax+4]
00000006 jae 00000013
00000008 shl edx,4
0000000b lea eax,[eax+edx+8]
0000000f mov eax,dword ptr [eax+8]
00000012 ret
00000013 call 74C3A62C
00000018 int 3

Too sad.

Early in 2001 we've read that .NET's JIT is smart enough to optimize repeated boundary checks.

In the year 2009 we still can verify that this is not the case (no matter how hard you try).

C#:

private int CharAt(int offset)
{
  string text = this.text;

  return (uint)offset >= (uint)text.Length ? -1 : text[offset];
}

Disassembly:

private int CharAt(int offset)
{
  string text = this.text;
00000000 push ebp
00000001 mov ebp,esp
00000003 mov ecx,dword ptr [ecx+30h]

  return (uint)offset >= (uint)text.Length ? -1 : text[offset];
00000006 cmp dword ptr [ecx+8],edx
00000009 jbe 00000017
0000000b cmp edx,dword ptr [ecx+8]
0000000e jae 0000001C
00000010 movzx eax,word ptr [ecx+edx*2+0Ch]
00000015 pop ebp
00000016 ret
00000017 or eax,0FFFFFFFFh
0000001a pop ebp
0000001b ret
0000001c call 74C24C6C
00000021 int 3

P.S. Neither this method is inlined (IL length is 25 bytes).

Yesterday, I've installed IE8.

Looks better here and there.

Today, I'm shocked!

I've reopened my web mail and it remembered the session. It keeps session cookies after closing IE8 instance!

I did not believe to myself and logged into an another web application, and then opened another IE8 instance. What do you think? - It shares the session between instances!

That is a serious security problem.

It prevents me from opening two sessions of a web application on my computer.

P.S. we have found that this problem was already discussed. See IE8 handles sessions/cookies different than IE7 - big trouble for - ...

Someone needs a brain surgery...

Quick solution: run IE8 with -nomerge command line option.

We'd like to return to the binary tree algorithms and spell what you cannot do with generics in C#. Well, you can do many things, however with generalization penalty.

Consider a binary tree node: Node(Parent, Left, Right). RB, AVL, and others algorithms attach some private information to this node to perform balancing.

You can express this idea methematically (and in C++), you cannot implement it efficiently in C#.

More focused example. Consider RB tree: Node(Parent, Left, Right, Color). There are a number of ways you may implement the internal structure of the tree. Algorithms themselves stay the same.

Straightforward implementation:

class Node
{
  Node Parent;
  Node Left;
  Node Right;
  bool Color;
}

This implementation allocates nodes in the heap and each node refers to other nodes.

Node navigator implementation:

class Node
{
  Node Left;
  Node Right;
  bool Color;
}

struct NodeNavigator
{
  Node[] nodes;
  int index;
}

Node does not refer to the parent. This reduces the memory consumption and simplifies object graph, which is good for GC. Tree is walked using a node navigator, which stores ancestors of the node.

Node as a structure:

struct Node
{
  int Parent;
  int Left;
  int Right;
  bool Color; // This might be integrated as highest bit of parent.
}


Tree is stored as an array of nodes. This is compact and GC efficient implementation.

Node as a structure, and with node navigator:

struct Node
{
  int Left;
  int Right;
  bool Color; // This might be integrated as highest bit of left.
}

struct NodeNavigator
{
  Tree tree;
  int[] nodes;
  int index;
}

Tree is stored as an array of nodes, and a navigator is used to walk it. This is the most compact implementation.

Each implementation has its virtues. The common between implementations is that they share the same balancing and navigation algorithms. Storage differences prevent a single C# implementation. To the contrast, C++ allows to define a concept "tree" and to define specializations of this concept, allowing a unified algorithms; all this is done without performance penalty.

P.S. java in this regard, is almost alternativeless...